This is the Linux app named ViReMa whose latest release can be downloaded as ViReMa_0.25.zip. It can be run online in the free hosting provider OnWorks for workstations.
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ViReMa
DESCRIPTION
ViReMa (Viral Recombination Mapper) detects and reports recombination or fusion events in virus genomes using deep sequencing datasets.
Feb 2014 - Our paper (Open Access) is available at Nucleic Acids Research:
"Discovery of functional genomic motifs in viruses with ViReMa–a Virus Recombination Mapper–for analysis of next-generation sequencing data"
http://nar.oxfordjournals.org/content/42/2/e11
This is an on-going project and updates will be regularly posted. Please get in touch with any questions, problems or suggestions.
Audience
Science/Research
Programming Language
Python
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/virema/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
