This is the Windows app named F-Tracker3D whose latest release can be downloaded as F-Tracker3D_SourceCode_v1_0.zip. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS
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F-Tracker3D
DESCRIPTION
F-Tracker3D is acronym of "fluorescent cell tracker in three-dimensions". It is a software tool designed to track fluorescent cells using time-lapse z-stacks of images acquired with a confocal or light-sheet microscope. First, each single cell is tracked in 2D by using the maximum intensity projections of the z-stacks and CellTracker, the free open source software available at: www.celltracker.website. Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the z-plane with the maximum intensity value for the different x-y positions previously determined.
F-Tracker3D is written in MATLAB (©, The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided.
Requirements: MATLAB 2015a and Image Processing Toolbox 9.2 or later versions.
Features
- Matlab standalone application
- 3D tracking
- CellTracker
- Fluorescent cells
- Confocal microscope
- Light-sheet microscope
Audience
Science/Research
Programming Language
MATLAB
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/f-tracker3d/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
