This is the Windows app named iMSAT to run in Windows online over Linux online whose latest release can be downloaded as SSRs.zip. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named iMSAT to run in Windows online over Linux online with OnWorks for free.
Follow these instructions in order to run this app:
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- 5. From the OnWorks Windows OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application and install it.
- 7. Download Wine from your Linux distributions software repositories. Once installed, you can then double-click the app to run them with Wine. You can also try PlayOnLinux, a fancy interface over Wine that will help you install popular Windows programs and games.
Wine is a way to run Windows software on Linux, but with no Windows required. Wine is an open-source Windows compatibility layer that can run Windows programs directly on any Linux desktop. Essentially, Wine is trying to re-implement enough of Windows from scratch so that it can run all those Windows applications without actually needing Windows.
SCREENSHOTS
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iMSAT to run in Windows online over Linux online
DESCRIPTION
iMSAT represents a full update of the vcf2MSAT program. This command line python program allows for a user to use the polymorphism data generated using SAM- and BAM-tools and a .fasta alignment file to search for polymorphic microsatellite markers (MSATs or STRs). By identifying polymorphic makers, rather than simple repeat regions as previous programs have done, iMSAT greatly increases the speed at which polymorphic MSATs that can be identified -- saving researchers precious time and money. Visit http://www.biomedcentral.com/1471-2164/15/858/abstract for the pdf article describing the utility of iMSAT and if you use the program please cite this article as: Andersen and Mills: iMSAT: a novel approach to the development of microsatellite loci using barcoded Illumina libraries. BMC Genomics 2014 15:858.Features
- Polymorphic Microsatellite Identification
- Illumina Sequencing
- Genomic Analysis
Audience
Science/Research
User interface
Command-line
Programming Language
Python
This is an application that can also be fetched from https://sourceforge.net/projects/imsat/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
