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MSqBAT download for Windows

Free download MSqBAT Windows app to run online win Wine in Ubuntu online, Fedora online or Debian online

This is the Windows app named MSqBAT whose latest release can be downloaded as msqbat.model.aggregator-3.0.0-SNAPSHOT-sources.jar. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named MSqBAT with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start any OS OnWorks online emulator from this website, but better Windows online emulator.

- 5. From the OnWorks Windows OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application and install it.

- 7. Download Wine from your Linux distributions software repositories. Once installed, you can then double-click the app to run them with Wine. You can also try PlayOnLinux, a fancy interface over Wine that will help you install popular Windows programs and games.

Wine is a way to run Windows software on Linux, but with no Windows required. Wine is an open-source Windows compatibility layer that can run Windows programs directly on any Linux desktop. Essentially, Wine is trying to re-implement enough of Windows from scratch so that it can run all those Windows applications without actually needing Windows.





MSqBAT is a freely-available all-platform software application for label-free quantification of proteins from LS-MS data. It was developed in the lab of Dr. Christoph Rösli at the Heidelberg Institude for Stem Cells and Experimental Medicine (HI-STEM) and the German Cancer Research Center (DKFZ).
It’s main features are
1) Label-free, MS1-based quantification
2) Support both LC-MALDI-MS- as well as LC-ESI-MS data
3) Supports both GeLC-MALDI-MS- and GeLC-ESI-MS data
4) Convenient, graphical user interface

The development of MSqBAT is kindly supported by YourKit Java Profiler.


  • label-free protein quantification
  • MS1-based quantification
  • MALDI ADA (Advanced Data Aquisition)



User interface

Java SWT

Programming Language


This is an application that can also be fetched from https://sourceforge.net/projects/msqbat/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.