This is the Windows app named ReViMS whose latest release can be downloaded as ReViMS_SourceCode_v2_0.zip. It can be run online in the free hosting provider OnWorks for workstations.
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ReViMS
DESCRIPTION
Reconstruction and Visualization from Multiple Sections (ReViMS), an open-source, user-friendly software for automatically estimating volume and several other features of 3D multicellular aggregates (i.e., cancer spheroid, zebrafish, fruit fly).
ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope. It provides a number of tools for: (a) segmenting z-stacks of fluorescence images; (b) reconstructing the 3D surface of the aggregates and estimating several features (including the volume).
ReViMS is written in MATLAB (The MathWorks, Inc., Massachusetts, USA). It is an open-source tool and the source code is freely available at: http://sourceforge.net/p/revims
Requirements: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions.
Features
- Matlab
- Microscopy
- 3D rendering tool
- Light-sheet microscope
- Fluorescence images
- Cancer spheroids
Audience
Science/Research, Engineering
Programming Language
MATLAB
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/revims/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
