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idconvert - Online in the Cloud

Run idconvert in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command idconvert that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


idconvert — Convert mass spectrometry identification file formats.

SYNOPSIS


idconvert [options] [filemasks]

DESCRIPTION


This manual page documents briefly the idconvert software shipped within the libpwiz-tools
package. This program allows one to convert mass spectrometry protein identification data
files from one format to another.

OPTIONS


-v | --verbose
Display detailed processing progress information.

-f | --filelist filename
Uses the contents of filename which lists filenames.

-o | --outdir dir
Set the output directory ('-' for stdout) to dir. By default, the output
directory is '.' (that is, the current working directory).

-c | --config filename
Set the configuration file to filename.

-e | --ext ext
Set the extension of the output files to ext. Can be mzid or pepXML or txt.

--mzIdentML
Write mzIdentML format (default).

--pepXML Write pepXML format.

--text Write hierarchical text format.

EXAMPLES


Convert sequest.pepXML to sequest.mzid

idconvert sequest.pepXML

Convert mascot.mzid to mascot.pepXML

idconvert mascot.mzid --pepXML

Use a configuration file

idconvert xtandem.pep.xml -c config.txt

RETURN VALUE


The number of failed files.

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