This is the Linux app named NAMD-Automator whose latest release can be downloaded as XRSSfeedforfil. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named NAMD-Automator with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
NAMD-Automator
Ad
DESCRIPTION
Welcome to NAMD-Automator, a user-friendly graphical interface designed to simplify the process of Molecular Dynamics (MD) Simulation, by creating configuration files, and automate the simulation with simple form-based tabs. NAMD is one of the widely used software for running these simulations, known for its scalability, speed and efficiency with large molecular systems. However, setting up a typical simulation in NAMD usually requires crafting configuration file for each stage of a Conventional MD Simulation (CMD), such as Minimization, Heating, Equilibration and Production. Following a detailed workflow after creating the files, deciding what should be the content of these files and how to execute the NAMD in command line interface can be challenging for users who are not familiar with scripting or command-line tools. Keeping this in mind, NAMD-Automator was created to make the process easier and more accessible.
This is an application that can also be fetched from https://sourceforge.net/projects/namd-automator/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
