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aevol_misc_extract - Online in the Cloud

Run aevol_misc_extract in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command aevol_misc_extract that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


aevol - an in silico experimental evolution platform

SYNOPSIS


aevol_misc_extract -h | --help
aevol_misc_extract -V | --version
aevol_misc_extract [-r GENER | -p POP_FILE] [-t PHEN_FILE] [-s SEQ_FILE] [-g NUM_GU] [-b]

DESCRIPTION


Aevol is a simulation platform that allows one to let populations of digital organisms
evolve in different conditions and study experimentally the mechanisms responsible for the
structuration of the genome and the transcriptome.

aevol_misc_extract
extracts the genotype and/or data about the phenotype of individuals in the
provided population and write them into text files easy to parse with e.g. matlab.

OPTIONS


-h, --help
print help, then exit

-V, --version
print version number, then exit

-r GENER
read generation GENER from a full aevol backup

-p POP_FILE
read the population saved in population file POP_FILE

-t PHEN_FILE
extract and save some infos about the phenotypes of the individuals to file
PHEN_FILE

-s SEQ_FILE
extract and save the sequences of the individuals to file SEQ_FILE

-g num_gu
only treat this genetic unit (by default: treat all genetic units)

-b
only treat the best individual

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