EnglishFrenchSpanish

Ad


OnWorks favicon

art - Online in the Cloud

Run art in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command art that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


art - Artemis genome browser and annotation tool

SYNOPSIS


art [options] SEQUENCE_FILE [+FEATURE_FILE...]

OPTIONS


SEQUENCE_FILE An EMBL, GenBank, FASTA, or GFF3 file
FEATURE_FILE An Artemis TAB file, or GFF file

-options FILE Read a text file of options from FILE
-debug Run using the debugging JVM instead
-fast | -fast64 Use the FastVM (hp Tru64 UNIX) with 32/64 bit
pointers

-Dblack_belt_mode=? Keep warning messages to a minimum [true,false]
-Doffset=XXX Open viewer at base position XXX [integer >= 1]
-Duserplot=FILE[,FILE2] Open one or more userplots
-Dloguserplot=FILE[,FILE2] Open one or more userplots, take log(data)
-Dbam=FILE[,FILE2,...] Open one or more BAM, VCF or BCF files
-DbamClone=n Open all BAMs in multiple (n > 1) panels
-Dbam[1,2,..]=FILE[,FILE2,..] Open BAMs in separate panels
-Dshow_snps Show SNP marks in BamView
-Dshow_snp_plot Open SNP plot in BamView
-Dshow_cov_plot Open coverage plot in BamView
-Dshow_forward_lines=? Hide/show forward frame lines [true,false]
-Dshow_reverse_lines=? Hide/show reverse frame lines [true,false]
-Dchado="h:p/d?u" Get Artemis to open this CHADO database
-Dread_only Open CHADO database read-only

EXAMPLES


% art AJ006275.embl
% art contigs.fa +annotation.gff +islands.tab
% art -Dblack_belt_mode=true -Dbam=ecoli_hiseq.bam E_coli_K12.gbk
% art -Duserplot=repeatmap.plot,geecee.plot Plasmid.gff3

Use art online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    wxPython
    wxPython
    A set of Python extension modules that
    wrap the cross-platform GUI classes from
    wxWidgets.. Audience: Developers. User
    interface: X Window System (X11), Win32 ...
    Download wxPython
  • 2
    packfilemanager
    packfilemanager
    This is the Total War pack file manager
    project, starting from version 1.7. A
    short introduction into Warscape
    modding: ...
    Download packfilemanager
  • 3
    IPerf2
    IPerf2
    A network traffic tool for measuring
    TCP and UDP performance with metrics
    around both throughput and latency. The
    goals include maintaining an active
    iperf cod...
    Download IPerf2
  • 4
    fre:ac - free audio converter
    fre:ac - free audio converter
    fre:ac is a free audio converter and CD
    ripper for various formats and encoders.
    It features MP3, MP4/M4A, WMA, Ogg
    Vorbis, FLAC, AAC, and Bonk format
    support, ...
    Download fre:ac - free audio converter
  • 5
    Matplotlib
    Matplotlib
    Matplotlib is a comprehensive library
    for creating static, animated, and
    interactive visualizations in Python.
    Matplotlib makes easy things easy and
    hard thing...
    Download Matplotlib
  • 6
    BotMan
    BotMan
    Write your chatbot logic once and
    connect it to one of the available
    messaging services, including Amazon
    Alexa, Facebook Messenger, Slack,
    Telegram or even yo...
    Download BotMan
  • More »

Linux commands

Ad