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average_genome_sizep - Online in the Cloud

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This is the command average_genome_sizep that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


average_genome_size - Calculate the average genome size (in bp) of species in a Grinder
library

DESCRIPTION


Calculate the average genome size (in bp) of species in a Grinder library given the
library composition and the full-genomes used to produce it.

REQUIRED ARGUMENTS


<db_fasta>
FASTA file containing the full-genomes used to produce the Grinder library.

<rank_file>
Grinder rank file that describes the library composition.

COPYRIGHT


Copyright 2009-2012 Florent ANGLY <[email protected]>

Grinder is free software: you can redistribute it and/or modify it under the terms of the
GNU General Public License (GPL) as published by the Free Software Foundation, either
version 3 of the License, or (at your option) any later version. Grinder is distributed
in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied
warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
Public License for more details. You should have received a copy of the GNU General
Public License along with Grinder. If not, see <http://www.gnu.org/licenses/>.

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