This is the command bed_to_juncs that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
bed_to_juncs - tophat component to convert junctions in BED format
bed_to_juncs: This script converts junctions in BED format produced by TopHat to the
internal .juncs format for re-use with future runs.
bed_to_juncs.py < junctions.bed
for help use --help
Use bed_to_juncs online using onworks.net services