EnglishFrenchSpanish

Ad


OnWorks favicon

bp_composite_LDp - Online in the Cloud

Run bp_composite_LDp in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command bp_composite_LDp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


bp_composite_LD -i filename.prettybase.txt --sortbyld > outfile

SYNOPSIS


bp_composite_LD -i filename.prettybase [-o out.LD] [-f prettybase/csv] [--sortbyld] [--noconvertindels]

DESCRIPTION
This a script which allows an easy way to calculate composite LD.

OPTIONS
-i or --in filename

-f or --format genotype format (prettybase or CSV)

--sortbyld To see data sorted by LD instead of just all the
site1/site2 pair LD values.

-o or --out output filename, otherwise will print to STDOUT

--noconvert (applicable for prettybase format file only)
if specified will NOT attempt to convert indel
states to 'I' and delete states ('-') to 'D'.

-h or --help see this documentation

AUTHOR Jason Stajich, Matthew Hahn
For more information contact:

Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich <jason-at-bioperl-dot-org>

Use bp_composite_LDp online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    Avogadro
    Avogadro
    Avogadro is an advanced molecular
    editor designed for cross-platform use
    in computational chemistry, molecular
    modeling, bioinformatics, materials
    science and ...
    Download Avogadro
  • 2
    XMLTV
    XMLTV
    XMLTV is a set of programs to process
    TV (tvguide) listings and help manage
    your TV viewing, storing listings in an
    XML-based format. There are utilities to
    do...
    Download XMLTV
  • 3
    strikr
    strikr
    Strikr Free Software project. Artifacts
    released under a 'intent based'
    dual license: AGPLv3 (community) and
    CC-BY-NC-ND 4.0 international
    (commercial)...
    Download strikr
  • 5
    GIFLIB
    GIFLIB
    giflib is a library for reading and
    writing gif images. It is API and ABI
    compatible with libungif which was in
    wide use while the LZW compression
    algorithm was...
    Download GIFLIB
  • 6
    Hugin
    Hugin
    With Hugin you can assemble a mosaic of
    photographs into a complete immersive
    panorama, stitch any series of
    overlapping pictures and much more..
    Audience: Sci...
    Download Hugin
  • 7
    Alt-F
    Alt-F
    Alt-F provides a free and open source
    alternative firmware for the DLINK
    DNS-320/320L/321/323/325/327L and
    DNR-322L. Alt-F has Samba and NFS;
    supports ext2/3/4...
    Download Alt-F
  • More »

Linux commands

Ad