This is the command bp_composite_LDp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
bp_composite_LD -i filename.prettybase.txt --sortbyld > outfile
SYNOPSIS
bp_composite_LD -i filename.prettybase [-o out.LD] [-f prettybase/csv] [--sortbyld] [--noconvertindels]
DESCRIPTION
This a script which allows an easy way to calculate composite LD.
OPTIONS
-i or --in filename
-f or --format genotype format (prettybase or CSV)
--sortbyld To see data sorted by LD instead of just all the
site1/site2 pair LD values.
-o or --out output filename, otherwise will print to STDOUT
--noconvert (applicable for prettybase format file only)
if specified will NOT attempt to convert indel
states to 'I' and delete states ('-') to 'D'.
-h or --help see this documentation
AUTHOR Jason Stajich, Matthew Hahn
For more information contact:
Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich <jason-at-bioperl-dot-org>
Use bp_composite_LDp online using onworks.net services
