This is the command bp_dbsplitp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
bp_dbsplit - script to split an input set of database(s) into smaller pieces
SYNOPSIS
bp_dbsplit.PLS --size 50 [-i inputfile] [-if inputformat] [-of outputformat]
[--prefix outputprefix] [ < file1 file 2 OR file1 file2]
DESCRIPTION
This script will take as input a list of filenames or a single file or from STDIN a
sequence database and split the database into separate files of X numbers of sequences.
You specify X with the "--size/-s" parameter. The input and output sequence format is any
that is supported by bioperl (fasta,embl,genbank,gcg, swissprot, etc).
You can specify the input data either as a single file with -i filename, or as a single
file as an argument like
% bp_dbsplit file1 file2
or as a list of sequence data with
% cat file1 file2 file3 | bp_dbsplit
You'll want to use the "--prefix" to specify what the output prefix will be.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send
your comments and suggestions preferably to the Bioperl mailing list. Your participation
is much appreciated.
[email protected] - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
Use bp_dbsplitp online using onworks.net services
