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bp_local_taxonomydb_queryp - Online in the Cloud

Run bp_local_taxonomydb_queryp in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command bp_local_taxonomydb_queryp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


bp_local_taxonomydb_query - query a local TaxonomyDB for species or taxonid

DESCRIPTION


This script provides an example implementation of access to a local Taxonomy database
implemented with Berkeley DB (DB_File module is needed).

Usage:

bp_local_taxonomydb_query.PLS: [-v] --nodes nodes.dmp --names names.dmp "Genus1 species1" "Genus2 species2"

Providing the nodes.dmp and names.dmp files from the NCBI Taxonomy dump (see
Bio::DB::Taxonomy::flatfile for more info) is only necessary on the first time running.
This will create the local indexes and may take quite a long time. However once created,
these indexes will allow fast access for species to taxon id OR taxon id to species name
lookups.

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