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This is the command bp_make_mrna_proteinp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


bp_make_mrna_protein - Convert an input mRNA/cDNA sequence into protein

DESCRIPTION


Convert an input mRNA/cDNA sequence into protein using translate()

-f/--frame Specifies frame [0,1,2]

One can also specify:

-t/--terminator Stop Codon character (defaults to '*')
-u/--unknown Unknown Protein character (defaults to 'X')
-cds/--fullcds Expected Full CDS (with start and Stop codon)
-throwOnError Throw error if no Full CDS (defaults to 0)
-if/--format Input format (defaults to FASTA/Pearson)
-of/--format Output format (defaults to FASTA/Pearson)
-o/--output Output Filename (defaults to STDOUT)
-i/--input Input Filename (defaults to STDIN)
-ct/--codontable Codon table to use (defaults to '1')

See Bio::PrimarySeq for more information on codon tables and the translate() method

AUTHOR - Jason Stajich


Email jason-at-bioperl-dot-org

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