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PROGRAM:

NAME


bp_split_seq - splits a sequence into equal sized chunks with an optional
overlapping range

SYNOPSIS


bp_split_seq -c 10000 [-o 1000] [-i] -f seq.in

DESCRIPTION


The script will split sequences into chunks

Mandatory Options:

-c Desired length of the resulting sequences.
-f Input file (must be FASTA format).

Special Options:

-o Overlapping range between the resulting sequences.
-i Create an index file with the resulting sequence files. This is
useful if you want to pass this list as input arguments into
another programs (i.e. CLUSTAL, HMMER, etc.).

FEEDBACK


Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send
your comments and suggestions preferably to the Bioperl mailing list. Your participation
is much appreciated.

[email protected] - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists

Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

AUTHORS


Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt>
(some enhancements)

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