This is the command bp_split_seqp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
bp_split_seq - splits a sequence into equal sized chunks with an optional
bp_split_seq -c 10000 [-o 1000] [-i] -f seq.in
The script will split sequences into chunks
-c Desired length of the resulting sequences.
-f Input file (must be FASTA format).
-o Overlapping range between the resulting sequences.
-i Create an index file with the resulting sequence files. This is
useful if you want to pass this list as input arguments into
another programs (i.e. CLUSTAL, HMMER, etc.).
User feedback is an integral part of the evolution of this and other Bioperl modules. Send
your comments and suggestions preferably to the Bioperl mailing list. Your participation
is much appreciated.
email@example.com - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
resolution. Bug reports can be submitted via the web:
Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt>
Use bp_split_seqp online using onworks.net services