EnglishFrenchSpanish

Ad


OnWorks favicon

bp_sreformatp - Online in the Cloud

Run bp_sreformatp in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command bp_sreformatp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


bpsreformat - convert sequence formats

DESCRIPTION


This script uses the SeqIO system that allows conversion of sequence formats either
sequence data or multiple sequence alignment data. The name comes from the fact that Sean
Eddy's program sreformat (part of the HMMER pkg) already does this. Sean's program tries
to guess the input formats while in our code we currently require your to specify what the
input and output formats are and if the data is from a multiple sequence alignment or from
straight sequence files.

Usage:

bpsreformat -if INFORMAT -of OUTFORMAT -i FILENAME -o output.FORMAT

-h/--help Print this help

-if/--informat Specify the input format

-of/--outformat Specify the output format

-i/--input Specify the input file name
(to pass in data on STDIN use minus sign as filename)
-o/--output Specify the output file name
(to pass data out on STDOUT use minus sign as filename)

--msa Specify this is multiple sequence alignment data

--special Will pass on special parameters to the AlignIO/SeqIO
object -- most of these are for Bio::AlignIO objects
Comma separated list of the following
nointerleaved -- for phylip,non-interleaved format
idlinebreak -- for phylip, makes it molphy format
percentages -- for clustalw, show % id per line

Use bp_sreformatp online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    deep-clean
    deep-clean
    A Kotlin script that nukes all build
    caches from Gradle/Android projects.
    Useful when Gradle or the IDE let you
    down. The script has been tested on
    macOS, but ...
    Download deep-clean
  • 2
    Eclipse Checkstyle Plug-in
    Eclipse Checkstyle Plug-in
    The Eclipse Checkstyle plug-in
    integrates the Checkstyle Java code
    auditor into the Eclipse IDE. The
    plug-in provides real-time feedback to
    the user about viol...
    Download Eclipse Checkstyle Plug-in
  • 3
    AstrOrzPlayer
    AstrOrzPlayer
    AstrOrz Player is a free media player
    software, part based on WMP and VLC. The
    player is in a minimalist style, with
    more than ten theme colors, and can also
    b...
    Download AstrOrzPlayer
  • 4
    movistartv
    movistartv
    Kodi Movistar+ TV es un ADDON para XBMC/
    Kodi que permite disponer de un
    decodificador de los servicios IPTV de
    Movistar integrado en uno de los
    mediacenters ma...
    Download movistartv
  • 5
    Code::Blocks
    Code::Blocks
    Code::Blocks is a free, open-source,
    cross-platform C, C++ and Fortran IDE
    built to meet the most demanding needs
    of its users. It is designed to be very
    extens...
    Download Code::Blocks
  • 6
    Amidst
    Amidst
    Amidst or Advanced Minecraft Interface
    and Data/Structure Tracking is a tool to
    display an overview of a Minecraft
    world, without actually creating it. It
    can ...
    Download Amidst
  • More »

Linux commands

Ad