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This is the command change_paired_read_orientationp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


change_paired_read_orientation - Change the orientation of paired-end reads in a FASTA
file

DESCRIPTION


Reverse the orientation, i.e. reverse-complement each right-hand paired-end read (ID
ending in /2) in a FASTA file.

REQUIRED ARGUMENTS


<in_fasta>
FASTA file containing the reads to re-orient.

<out_fasta>
Output FASTA file where to write the reads.

COPYRIGHT


Copyright 2009-2012 Florent ANGLY <[email protected]>

Grinder is free software: you can redistribute it and/or modify it under the terms of the
GNU General Public License (GPL) as published by the Free Software Foundation, either
version 3 of the License, or (at your option) any later version. Grinder is distributed
in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied
warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
Public License for more details. You should have received a copy of the GNU General
Public License along with Grinder. If not, see <http://www.gnu.org/licenses/>.

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