OnWorks favicon

cmconvert - Online in the Cloud

Run cmconvert in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command cmconvert that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



cmconvert - convert Infernal covariance model files


cmconvert [options] <cmfile>


The cmconvert utility converts an input covariance model file to different Infernal

By default, the input CM file can be any CM file created by Infernal version 1.0 or later;
the output CM file is a current Infernal format. Files from versions older than version
1.0 cannot be converted.

<cmfile> may be '-' (dash), which means reading this input from stdin rather than a file.


-h Help; print a brief reminder of command line usage and all available options.

-a Output profiles in ASCII text format. This is the default.

-b Output profiles in binary format.

-1 Output in legacy Infernal1 (Infernal v1.0 through v1.0.2) ASCII text format. Due to
important changes between version v1.0.2 and v1.1, any E-value statistic parameters
calculated by cmcalibrate in <cmfile> will not be written to the converted output

Do not output a CM file. Instead, output one maximum likelihood p7 HMM built from
each CM in <cmfile> in HMMER3 ASCII text format. The HMM will have been constructed
to be as similar as possible to the CM, without modeling secondary structure. This
option could be useful for comparative studies of Infernal and HMMER3.

--fhmm Do not output a CM file. Instead, output the filter p7 HMM for each CM in <cmfile>
in HMMER3 ASCII text format.

Use cmconvert online using onworks.net services

Free Servers & Workstations

Download Windows & Linux apps

  • 1
    Laravel is a free, open-source PHP web
    framework. Features:Expressive,
    beautiful syntax.Database agnostic
    migrationsSchema builderPainless
    routingPowerful queu...
    Download Laravel
  • 2
    nmon for Linux
    nmon for Linux
    nmon is short for Nigel's
    Performance Monitor It either shows you
    the stats on-screen updating once a
    second or saves the data to a CSV file
    for later anal...
    Download nmon for Linux
  • 3
    VBA-M (Archived - Now on Github)
    VBA-M (Archived - Now on Github)
    Project has moved to
    Features:Cheat creationsave statesmulti
    system, supports gba, gbc, gb, sgb,
    Download VBA-M (Archived - Now on Github)
  • 4
    Linux System Optimizer and Monitoring
    Github Repository:
    Audience: End Users/Desktop. User
    interface: Qt. Programming La...
    Download Stacer
  • 5
    Fork of TeamWinRecoveryProject(TWRP)
    with many additional functions, redesign
    and more Features:Supports Treble and
    non-Treble ROMsUp-to-date Oreo kernel,
    Download OrangeFox
  • 6
    itop - ITSM  CMDB OpenSource
    itop - ITSM CMDB OpenSource
    IT Operations Portal: a complete open
    source, ITIL, web based service
    management tool including a fully
    customizable CMDB, a helpdesk system and
    a document man...
    Download itop - ITSM CMDB OpenSource
  • 7
    Clementine is a multi-platform music
    player and library organizer inspired by
    Amarok 1.4. It has a fast and
    easy-to-use interface, and allows you to
    search and ...
    Download Clementine
  • More »

Linux commands