This is the command cmpress that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
cmpress - prepare a covariance model database for cmscan
cmpress [options] <cmfile>
Starting from a CM database <cmfile> in standard Infernal-1.1 format, construct binary
compressed datafiles for cmscan. The cmpress step is required for cmscan to work.
The <cmfile> must be have already been calibrated with cmcalibrate for cmpress to work.
Four files are created: <cmfile>.i1m, <cmfile>.i1i, <cmfile>.i1f, and <cmfile>.i1p. The
<cmfile>.i1m file contains the covariance models, associated filter p7 profile HMMs and
their annotation in a binary format. The <cmfile>.i1i file is an SSI index for the
<cmfile>.i1m file. The <cmfile>.i1f file contains precomputed data structures for the
fast heuristic filter (the SSV filter) for the filter p7 profile HMMs in <cmfile>. The
<cmfile>.i1p file contains precomputed data structures for the rest of each profile filter
<cmfile> may not be '-' (dash); running cmpress on a standard input stream rather than a
file is not allowed.
-h Help; print a brief reminder of command line usage and all available options.
-F Force; overwrites any previous cmpress'ed datafiles. The default is to bitch about
any existing files and ask you to delete them first.
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