This is the command cmtk-fibxform that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
fibxform - Apply coordinate transformations to point coordinates in .fib file.
A file with fiber tracking results from the UNC Fiber Tracking tool is read from Standard
Input and one or more (concatenated) coordinate transformations are applied to all fiber
point coordinates. The result is written to Standard Output, again in UNC fiber file
Global Toolkit Options (these are shared by all CMTK tools)
Write list of basic command line options to standard output.
Write complete list of basic and advanced command line options to standard output.
Write list of command line options to standard output in MediaWiki markup.
Write man page source in 'nroff' markup to standard output.
Write toolkit version to standard output.
Write the current command line to standard output.
Set verbosity level.
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Numerical tolerance of B-spline inversion in mm. Smaller values will lead to more
accurate inversion, but may increase failure rate. [Default: 0.001]
Set source image of the transformation (i.e., an image defining the space in which
fiber tracking was performed) to correct for differences in orientation and
coordinate space. [Default: NONE]
Set target image of the transformation (i.e., the image that the fiber track points
are mapped into) to correct for differences in orientation and coordinate space.
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
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