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cmtk-fibxform - Online in the Cloud

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PROGRAM:

NAME


fibxform - Apply coordinate transformations to point coordinates in .fib file.

SYNOPSIS


fibxform XformList

DESCRIPTION


A file with fiber tracking results from the UNC Fiber Tracking tool is read from Standard
Input and one or more (concatenated) coordinate transformations are applied to all fiber
point coordinates. The result is written to Standard Output, again in UNC fiber file
format.

OPTIONS


Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--inversion-tolerance <double>
Numerical tolerance of B-spline inversion in mm. Smaller values will lead to more
accurate inversion, but may increase failure rate. [Default: 0.001]

--source-image <image-path>
Set source image of the transformation (i.e., an image defining the space in which
fiber tracking was performed) to correct for differences in orientation and
coordinate space. [Default: NONE]

--target-image <image-path>
Set target image of the transformation (i.e., the image that the fiber track points
are mapped into) to correct for differences in orientation and coordinate space.
[Default: NONE]

AUTHORS


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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