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PROGRAM:

NAME


fit_spline_xform - Fit Single B-Spline Transformation to Concatenated Transformation List

SYNOPSIS


fit_spline_xform InputImage XformList

DESCRIPTION


Fit a parametric nonrigid transformation (B-spline free-form deformation) to a list of
concatenated, optionally inverted, transformations.

OPTIONS


Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Fitting Options
--levels <integer>
Number of levels in the multi-level B-spline approximation procedure. [Default: 1]

--fit-affine-first
Fit affine transformation first, then initialize spline with it.

--final-cp-spacing <double>
Final control point grid spacing of the output B-spline transformation. [Default: 0]

--final-cp-dims <string>
Final control point grid dimensions (i.e., number of controlpoints) of the output B-
spline transformation. To be provided as 'dimX,dimY,dimZ'. [Default: NONE]

Input Options
--inversion-tolerance <double>
Numerical tolerance of B-spline inversion in mm. Smaller values will lead to more
accurate inversion, but may increase failure rate. [Default: 1e-08]

Output Options
--output <transformation-path>, -o <transformation-path>
Path for the output transformation. [Default: NONE]

AUTHORS


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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