EnglishFrenchSpanish

OnWorks favicon

cmtk-lmsba - Online in the Cloud

Run cmtk-lmsba in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command cmtk-lmsba that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


lmsba - Local voting.

SYNOPSIS


lsba [options] targetImage atlasIntensity1 atlasLabels1 [atlasIntensity2 atlasLabels2
[...]]

DESCRIPTION


This tool combines multiple multi-class segmentations from co-registered and reformatted
atlases using locally-weighted Shape-Based Averaging.

OPTIONS


Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Input Options
--set-padding-value <double>
Set padding value for input intensity images. Pixels with this value will be ignored.
[Default: disabled]

Label Combination Options
--patch-radius <none>
Radius of image patch (in pixels) used for local similarity computation. [Default:
5]

--search-radius <none>
Search radius for local image patch matching. The algorithm finds the best-matching
patch within this radius by exhaustive search. [Default: 0]

--no-local-outliers
Detect and exclude local outliers in the Shape Based Averaging procedure.

--no-global-outliers
Detect and exclude global outliers by removing poorly correlated atlases prior to
local SBA procedure.

Output Options
--output <string>, -o <string>
File system path for the output image. [Default: lsbo.nii ]

AUTHORS


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

Use cmtk-lmsba online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    packfilemanager
    packfilemanager
    This is the Total War pack file manager
    project, starting from version 1.7. A
    short introduction into Warscape
    modding: ...
    Download packfilemanager
  • 2
    IPerf2
    IPerf2
    A network traffic tool for measuring
    TCP and UDP performance with metrics
    around both throughput and latency. The
    goals include maintaining an active
    iperf cod...
    Download IPerf2
  • 3
    fre:ac - free audio converter
    fre:ac - free audio converter
    fre:ac is a free audio converter and CD
    ripper for various formats and encoders.
    It features MP3, MP4/M4A, WMA, Ogg
    Vorbis, FLAC, AAC, and Bonk format
    support, ...
    Download fre:ac - free audio converter
  • 4
    Matplotlib
    Matplotlib
    Matplotlib is a comprehensive library
    for creating static, animated, and
    interactive visualizations in Python.
    Matplotlib makes easy things easy and
    hard thing...
    Download Matplotlib
  • 5
    BotMan
    BotMan
    Write your chatbot logic once and
    connect it to one of the available
    messaging services, including Amazon
    Alexa, Facebook Messenger, Slack,
    Telegram or even yo...
    Download BotMan
  • 6
    Joplin
    Joplin
    Joplin is a free and open source
    note-taking and to-do application that
    can handle a large number of notes in
    Markdown format, organize them into
    notebooks and...
    Download Joplin
  • More »

Linux commands

Ad