cmtk-lsba - Online in the Cloud

PROGRAM:

NAME

lsba - Local voting.

SYNOPSIS

lsba [options] targetImage atlasIntensity1 atlasLabels1 [atlasIntensity2 atlasLabels2
[...]]

DESCRIPTION

This tool combines multiple binary segmentations from co-registered and reformatted
atlases using locally-weighted Shape-Based Averaging.

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Input Options
--set-padding-value <double>
Set padding value for input intensity images. Pixels with this value will be ignored.
[Default: disabled]

Label Combination Options
--patch-radius <none>
Radius of image patch (in pixels) used for local similarity computation. [Default:
5]

--search-radius <none>
Search radius for local image patch matching. The algorithm finds the best-matching
patch within this radius by exhaustive search. [Default: 0]

--no-local-outliers
Detect and exclude local outliers in the Shape Based Averaging procedure.

--no-global-outliers
Detect and exclude global outliers by removing poorly correlated atlases prior to
local SBA procedure.

Output Options
--output <string>, -o <string>
File system path for the output image. [Default: lsbo.nii ]

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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