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lsba - Local voting.


lsba [options] targetImage atlasIntensity1 atlasLabels1 [atlasIntensity2 atlasLabels2


This tool combines multiple binary segmentations from co-registered and reformatted
atlases using locally-weighted Shape-Based Averaging.


Global Toolkit Options (these are shared by all CMTK tools)
Write list of basic command line options to standard output.

Write complete list of basic and advanced command line options to standard output.

Write list of command line options to standard output in MediaWiki markup.

Write man page source in 'nroff' markup to standard output.

Write toolkit version to standard output.

Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Input Options
--set-padding-value <double>
Set padding value for input intensity images. Pixels with this value will be ignored.
[Default: disabled]

Label Combination Options
--patch-radius <none>
Radius of image patch (in pixels) used for local similarity computation. [Default:

--search-radius <none>
Search radius for local image patch matching. The algorithm finds the best-matching
patch within this radius by exhaustive search. [Default: 0]

Detect and exclude local outliers in the Shape Based Averaging procedure.

Detect and exclude global outliers by removing poorly correlated atlases prior to
local SBA procedure.

Output Options
--output <string>, -o <string>
File system path for the output image. [Default: lsbo.nii ]


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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