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cmtk-lsba - Online in the Cloud

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This is the command cmtk-lsba that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


lsba - Local voting.

SYNOPSIS


lsba [options] targetImage atlasIntensity1 atlasLabels1 [atlasIntensity2 atlasLabels2
[...]]

DESCRIPTION


This tool combines multiple binary segmentations from co-registered and reformatted
atlases using locally-weighted Shape-Based Averaging.

OPTIONS


Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Input Options
--set-padding-value <double>
Set padding value for input intensity images. Pixels with this value will be ignored.
[Default: disabled]

Label Combination Options
--patch-radius <none>
Radius of image patch (in pixels) used for local similarity computation. [Default:
5]

--search-radius <none>
Search radius for local image patch matching. The algorithm finds the best-matching
patch within this radius by exhaustive search. [Default: 0]

--no-local-outliers
Detect and exclude local outliers in the Shape Based Averaging procedure.

--no-global-outliers
Detect and exclude global outliers by removing poorly correlated atlases prior to
local SBA procedure.

Output Options
--output <string>, -o <string>
File system path for the output image. [Default: lsbo.nii ]

AUTHORS


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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