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cmtk-probe - Online in the Cloud

Run cmtk-probe in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command cmtk-probe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


probe - Probe image data.

SYNOPSIS


probe InputImage

DESCRIPTION


This tool prints pixel values or symbolic labels at a list of user-provided image
coordinates.

OPTIONS


Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--coordinates
Coordinate specification mode. Supported values: "absolute", "indexed", "relative",
"physical", where the default is "absolute", or use one of the following:

--absolute
Use absolute volume coordinates. For each dimension, the valid range is [0,FOV].
[This is the default]

--indexed
Use grid indexes to specify coordinates. For each dimension, the valid value
range is [0,Dims-1].

--relative
Use relative volume coordinates. For each dimension, the valid range is [0,1].

--physical
Use physical volume coordinates. Each given location is transformed into image
coordinates via the inverse of the images's index-to-physical space matrix.

--interpolation
Image interpolation method. Supported values: "nn", "linear", "cubic", "pv", "sinc-
cosine", "sinc-hamming", where the default is "nn", or use one of the following:

--nn Nearest neighbor interpolation [This is the default]

--linear
Trilinear interpolation

--cubic
Tricubic interpolation

--pv Partial volume interpolation

--sinc-cosine
Sinc interpolation with cosine window

--sinc-hamming
Sinc interpolation with Hamming window

--sinc-window-radius <integer>
Window radius for Sinc interpolation [Default: 3]

--no-reorient
Disable image reorientation into RAS alignment.

AUTHORS


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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