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cmtk-reorient - Online in the Cloud

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This is the command cmtk-reorient that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


reorient - Reorientation

SYNOPSIS


reorient [options] new-orientation infile outfile

DESCRIPTION


Convert between image orientations, i.e., physically re-order pixel array and adapt stored
anatomical orientation information

OPTIONS


Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--input-orientation <string>, -i <string>
Override input orientation. This is a three-letter code, e.g., 'RAS', 'LPI', etc.
[Default: NONE]

--output-orientation <string>, -o <string>
Override output orientation. Default is 'RAS', or the closest match supported by the
output image file format [Default: NONE]

--output-space <string>
Override output coordinate space (e.g., 'RAS', 'LAS', 'LPS'). This does not affect
the array order. Default is to write image in the input image space. [Default: NONE]

AUTHORS


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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