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cmtk-stream_pixels - Online in the Cloud

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PROGRAM:

NAME


stream_pixels - Stream pixel data from one or more images to Standard Output.

SYNOPSIS


stream_pixels ImagePaths

DESCRIPTION


This tool reads one or more images and writes all their pixels to standard output in
binary form. Optionally, each image can be reoriented to a specified anatomical
orientation and/or converted to a different data type. This is useful for piping image
data through a pipeline, e.g., the Camino DTI toolkit.

OPTIONS


Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--reorient <string>
Reorient all images to anatomy-based standard orientation, e.g., RAS or LPS for
axial. Default: no reorientation. [Default: NONE]

--change-endian
Change endianness. Default: native endianness.

--convert
Convert data to new scalar type. Default: no conversion. Supported values: "char",
"byte", "short", "ushort", "int", "uint", "float", "double", or use one of the
following:

--char
8 bits, signed integer

--byte
8 bits, unsigned integer

--short
16 bits, signed integer

--ushort
16 bits, unsigned integer

--int
32 bits, signed integer

--uint
32 bits, unsigned integer

--float
32-bits, single-precision floating point

--double
64 bits, double-precision floating point

AUTHORS


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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