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cmtk-streamxform - Online in the Cloud

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This is the command cmtk-streamxform that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


streamxform - Apply coordinate transformation to point coordinates from text stream.

SYNOPSIS


streamxform XformList

DESCRIPTION


An ASCII-format list of point coordinates is read from standard input and a user-provided
sequence of coordinate transformations (each optionally inverted) is applied to them. The
transformed points are then written to standard output.

OPTIONS


Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Transformation Options
--affine-only
Apply only the affine component of each transformation (or its inverse, if specified)
in the given series, even if the actual transformation is nonrigid.

--inversion-tolerance <double>
Numerical tolerance of B-spline inversion in mm. Smaller values will lead to more
accurate inversion, but may increase failure rate. [Default: 1e-08]

Output Options
--separator <string>
Field separator - this string or character is used to separate x, y, and z
coordinates from each other, and z from the remainder of every line. [Default: ]

--precision <integer>
Floating point precision for output file. [Default: 9]

Image Space Options
--source-image <string>
Set source image of the transformation (i.e., the image that the transformation maps
points FROM) to correct for differences in orientation and coordinate space.
[Default: NONE]

--target-image <string>
Set target image of the transformation (i.e., the image that the transformation maps
points TO) to correct for differences in orientation and coordinate space. [Default:
NONE]

AUTHORS


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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