cmtk-volume_injection - Online in the Cloud

PROGRAM:

NAME

volume_injection - Volume injection

SYNOPSIS

volume_injection [options] refImage xform0 inImage0 [xform1 inImage1 ...]

DESCRIPTION

Reconstruction a high-resolution volume from multiple co-registered (low-resolution)
images using forward volume injection

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Input Options
--exclude-first-image, -x
Exclude first image from reconstruction as a separate registration target image)

--pass-weight <string>, -W <string>
Set contribution weight for a pass in the form 'pass:weight'

Reconstruction Grid Options
--recon-grid <string>
Define reconstruction grid as Nx,Ny,Nz:dX,dY,dZ[:Ox,Oy,Oz] (dims:pixel:offset)

--recon-grid-path <string>, -R <string>
Give path to grid that defines reconstructed image grid [including offset] [Default:
NONE]

--crop <string>
Crop reference to pixel region x0,y0,z1:x1,y1,z1

Volume Injection Options
--isotropic-injection
Use isotropic volume injection [default: scaled with pass image pixel size per
dimension]

--injection-kernel-sigma <double>, -S <double>
Gauss contribution [Default: 1]

--injection-kernel-radius <integer>, -r <integer>
VolumeInjectionRadius of affected pixel [Default: 0]

Output Options
--output <string>, -o <string>
Output image path [Default: volume_injection.nii ]

--write-images-as-float, -F
Write output images as floating point [default: same as input]

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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