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convert_image - Online in the Cloud

Run convert_image in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command convert_image that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


convert_image - convert images to CBF format using a template

SYNOPSIS


convert_image [options]

DESCRIPTION


convert_image is a program that can convert images from a MAR180, MAR300, MAR345 or ADSC
CCD detector and convert them to CBF format.

convert_image requires two arguments: imagefile and cbffile. Those are the primary input
and output. The detector type is extracted from the image file or from the command line,
converted to lower case and used to construct the name of a template cbf file to use for
the copy. The template file name is of the form template_name_columnsxrows.

To run makecbf with the example image, type:

makecbf example.mar2300 test.cbf

OPTIONS


-i input_img
(default: stdin) the input file as an image in smv, mar300, or mar345 format. If
input_img is not specified or is given as "-", it is copied from stdin to a
temporary file.

-p template_cbf
the template for the final cbf to be produced. If template_cbf is not specified
the name is constructed from the first token of the detector name and the image
size as template_<type>_<columns>x<rows>.cbf

-o output_cbf
(default: stdout ) the output cbf combining the image and the template. If the
output_cbf is not specified or is given as "-", it is written to stdout.

-d detectorname
a detector name to be used if none is provided in the image header.

-F when writing packed compression, treat the entire image as one line with no
averaging

-m [x|y|x=y]
(default x=y, square arrays only) mirror the array in the x-axis (y -> -y) in the
y-axis (x -> -x) or in x=y ( x -> y, y-> x)

-r n rotate the array n times 90 degrees counter clockwise x -> y, y -> -x for each
rotation, n = 1, 2 or 3

-R if setting a beam center, set reference values of axis settings as well as standard
settings

-z distance
detector distance along Z-axis

-c category_alias=category_root

-t tag_alias=tagroot
map the given alias to the given root, so that instead of outputting the alias, the
root will be presented in the output cbf instead. These options may be repeated as
many times as needed.

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