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dbgete - Online in the Cloud

Run dbgete in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command dbgete that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


dbget - Retrieve database entries for a named database, data type and data identifier

SYNOPSIS


dbget -database string -datatype string -identifier string [-outfile outfile]
-outdir outdir

dbget -help

DESCRIPTION


dbget is a command line program from EMBOSS (“the European Molecular Biology Open Software
Suite”). It is part of the "Utils:Misc" command group(s).

OPTIONS


Input section
-database string
This is the name of a database from the catalogue of public databases in the EMBOSS
data file DRCAT.dat. If you are unsure of the available databases use dbfind. If you
have a database name but are not sure its valid, use isdbname.

-datatype string
This is the name of a retrievable datatype from the catalogue of public databases in
the EMBOSS data file DRCAT.dat. The names are terms from the 'data' branch of the EDAM
ontology, http://edamontology.sourceforge.net/. If you are unsure of the available
retrievable datatypes for a given database, use dbtellquery. If you have a datatype
name but are not sure its valid, use isdbdata.

-identifier string
This is a data identifier (e.g. a sequence accession number) that is used to specify
the data (of type 'datatype') to retrieve. If you're unsure of the data identifier(s)
that are used for a given query (database/datatype) use dbtellquery. The types of data
identifier are listed under the 'Data identifier' branch of the EDAM ontology
(http://edamontology.sourceforge.net/). For example values, see the catalogue of
public databases in the EMBOSS data file DRCAT.dat. If you have a data identifier but
are unsure of its type, use idtell.

Required section
Additional section
Advanced section
Output section
-outfile outfile
Default value: stdout

-outdir outdir
Default value: .

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