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domainrepe - Online in the Cloud

Run domainrepe in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command domainrepe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


domainrep - Reorder DCF file to identify representative structures.

SYNOPSIS


domainrep -dcfinfile infile -node list -dcfoutfile outfile

domainrep -help

DESCRIPTION


domainrep is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Protein:3D Structure" command group(s).

OPTIONS


Input section
-dcfinfile infile
This option specifies the name of DCF file (domain classification file) (input). A
'domain classification file' contains classification and other data for domains from
SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE
and CATHPARSE. Domain sequence information can be added to the file by using
DOMAINSEQS.

Required section
-node list
This option specifies the node fore reordering the file. Reordering can be done for
any specified node in the SCOP or CATH hierarchies. For example by selecting 'Class'
entries belonging to the same Class will be reordered in turn. Default value: 1

Output section
-dcfoutfile outfile
This option specifies the name of DCF file (domain classification file) (output). A
'domain classification file' contains classification and other data for domains from
SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE
and CATHPARSE. Domain sequence information can be added to the file by using
DOMAINSEQS. Default value: test.scop

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