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ecofind - Online in the Cloud

Run ecofind in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command ecofind that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


ecofind - searching for taxonomic and rank and taxonomy id for given regular expression
patterns

DESCRIPTION


ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It helps to
estimate Barcode primers quality.

This program belongs to the exoPCR package.

SYNOPSIS


ecofind [options] <patterns>

OPTIONS


-a : [A]ll enable the search on all alternative names and not only scientific names.

-d : [D]atabase containing the taxonomy.
To match the expected format, the database has to be formated first by the
ecoPCRFormat.py program located in the tools directory. Write the database radical
without any extension.

-h : [H]elp - print <this> help

-l : [L]ist all taxonomic rank available for -r option

-P : [P]ath : add a column containing the full path for each displayed taxon

-p : [P]arents : specifiying this option displays all parental tree's information for the
given taxid.

-r : [R]estrict to given taxonomic rank

-s : [S]ons: specifiying this option displays all subtree's information for the given
taxid.

-P : Display taxonomic [P]ath as suplementary column in output

arguments:
<taxon> name pattern bearing regular expressions

Use ecofind online using onworks.net services


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