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ecogrep - Online in the Cloud

Run ecogrep in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command ecogrep that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


ecogrep - filtering ecoPCR result based on taxonomic id filter and regular expression
pattern

SYNOPSIS


ecogrep [options] filename

DESCRIPTION


ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It helps to
estimate Barcode primers quality.

This program belongs to the exoPCR package.

OPTIONS


-1 : [FIRST] : compare the given pattern with direct strand oligonucleotide

-2 : [SECOND] : compare the given pattern with reverse strand oligonucleotide

-d : [D]atabase containing taxonomic information

-e : [E]rrors : max error allowed in pattern match (option-1, -2 and -p) (0 by
default)

-p : [P]attern : oligonucleotide pattern

-h : [H]elp : print <this> help

-i : [I]gnore subtree under given taxonomic id

-r : [R]estrict search to subtree under given taxomic id

-v : in[V]ert the sense of matching, to select non-matching lines.

argument:
ecoPCR output file name

Use ecogrep online using onworks.net services


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