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edialigne - Online in the Cloud

Run edialigne in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command edialigne that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


edialign - Local multiple alignment of sequences

SYNOPSIS


edialign -sequences seqset -nucmode list -revcomp boolean [-overlapw selection]
[-linkage list] [-maxfragl integer] -fragmat boolean -fragsim integer
[-itscore boolean] [-threshold float] -mask boolean -dostars boolean
-starnum integer -outfile outfile -outseq seqoutall

edialign -help

DESCRIPTION


edialign is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment:Multiple" command group(s).

OPTIONS


Input section
-sequences seqset

Additional section
-nucmode list
Nucleic acid sequence alignment mode (simple, translated or mixed) Default value: n

-revcomp boolean
Default value: N

-overlapw selection
By default overlap weights are used when Nseq =<35 but you can set this to 'yes' or
'no' Default value: default (when Nseq =< 35)

-linkage list
Clustering method to construct sequence tree (UPGMA, minimum linkage or maximum
linkage) Default value: UPGMA

-maxfragl integer
Default value: 40

-fragmat boolean
Default value: N

-fragsim integer
Default value: 4

-itscore boolean
Default value: N

-threshold float
Default value: 0.0

Output section
-mask boolean
Default value: N

-dostars boolean
Default value: N

-starnum integer
Default value: 4

-outfile outfile

-outseq seqoutall

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