This is the command edialigne that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
edialign - Local multiple alignment of sequences
SYNOPSIS
edialign -sequences seqset -nucmode list -revcomp boolean [-overlapw selection]
[-linkage list] [-maxfragl integer] -fragmat boolean -fragsim integer
[-itscore boolean] [-threshold float] -mask boolean -dostars boolean
-starnum integer -outfile outfile -outseq seqoutall
edialign -help
DESCRIPTION
edialign is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment:Multiple" command group(s).
OPTIONS
Input section
-sequences seqset
Additional section
-nucmode list
Nucleic acid sequence alignment mode (simple, translated or mixed) Default value: n
-revcomp boolean
Default value: N
-overlapw selection
By default overlap weights are used when Nseq =<35 but you can set this to 'yes' or
'no' Default value: default (when Nseq =< 35)
-linkage list
Clustering method to construct sequence tree (UPGMA, minimum linkage or maximum
linkage) Default value: UPGMA
-maxfragl integer
Default value: 40
-fragmat boolean
Default value: N
-fragsim integer
Default value: 4
-itscore boolean
Default value: N
-threshold float
Default value: 0.0
Output section
-mask boolean
Default value: N
-dostars boolean
Default value: N
-starnum integer
Default value: 4
-outfile outfile
-outseq seqoutall
Use edialigne online using onworks.net services
