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edialign - Local multiple alignment of sequences


edialign -sequences seqset -nucmode list -revcomp boolean [-overlapw selection]
[-linkage list] [-maxfragl integer] -fragmat boolean -fragsim integer
[-itscore boolean] [-threshold float] -mask boolean -dostars boolean
-starnum integer -outfile outfile -outseq seqoutall

edialign -help


edialign is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment:Multiple" command group(s).


Input section
-sequences seqset

Additional section
-nucmode list
Nucleic acid sequence alignment mode (simple, translated or mixed) Default value: n

-revcomp boolean
Default value: N

-overlapw selection
By default overlap weights are used when Nseq =<35 but you can set this to 'yes' or
'no' Default value: default (when Nseq =< 35)

-linkage list
Clustering method to construct sequence tree (UPGMA, minimum linkage or maximum
linkage) Default value: UPGMA

-maxfragl integer
Default value: 40

-fragmat boolean
Default value: N

-fragsim integer
Default value: 4

-itscore boolean
Default value: N

-threshold float
Default value: 0.0

Output section
-mask boolean
Default value: N

-dostars boolean
Default value: N

-starnum integer
Default value: 4

-outfile outfile

-outseq seqoutall

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