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fastaq-add_indels - Online in the Cloud

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This is the command fastaq-add_indels that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


fastaq_add_indels - Deletes or inserts bases at given position(s)

DESCRIPTION


usage: fastaq_add_indels [options] <infile> <outfile>

Deletes or inserts bases at given position(s)

positional arguments:
infile Name of input file

outfile
Name of output file

optional arguments:
-h, --help
show this help message and exit

-d Name:start:bases, --delete Name:start:bases
Delete the given bases from the given sequence. Format same as samtools view:
name:start-end. This option can be used multiple times (once for each region to
delete). Overlapping coords will be merged before deleting

--delete_range P,start,step
Deletes bases starting at position P in each sequence of the input file. Deletes
start + (n-1)*step bases from sequence n.

-i Name:start:bases, --insert Name:start:bases
Insert a random string of bases at the given position. Format is
name:position:number_to_add. Bases are added after the position. This option can be
used multiple times

--insert_range P,start,step
Inserts random bases starting after position P in each sequence of the input file.
Inserts start + (n-1)*step bases into sequence n.

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