fastaq-scaffolds_to_contigs - Online in the Cloud

PROGRAM:

NAME

fastaq_scaffolds_to_contigs - Creates a file of contigs from a file of scaffolds

DESCRIPTION

usage: fastaq_scaffolds_to_contigs [options] <infile> <outfile>

Creates a file of contigs from a file of scaffolds - i.e. breaks at every gap in the input

positional arguments:
infile Name of input file

outfile
Name of output contigs file

optional arguments:
-h, --help
show this help message and exit

--number_contigs
Use this to enumerate contig names 1,2,3,... within each scaffold

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