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fastaq-search_for_seq - Online in the Cloud

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This is the command fastaq-search_for_seq that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


fastaq_search_for_seq - Find all exact matches to a string (and its reverse complement)

DESCRIPTION


usage: fastaq_search_for_seq [options] <infile> <outfile> <search_string>

Searches for an exact match on a given string and its reverse complement, in every
sequence of input sequence file. Case insensitive. Guaranteed to find all hits

positional arguments:
infile Name of input file

outfile
Name of outputfile. Tab-delimited output: sequence name, position, strand

search_string
String to search for in the sequences

optional arguments:
-h, --help
show this help message and exit

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