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fastatool - Online in the Cloud

Run fastatool in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command fastatool that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


fastatool - Provides a set of tools useful when working with FASTA files.

DESCRIPTION


This program is part of the MIRA assembler package. Fastatool provides a set of tools
useful when working with FASTA trace files.

Please check out the documentation below for more detailed information.

SYNOPSIS"


fastatool <toolname> <tool parameters>

OPTIONS


clip Clips bases on the left and right of a FASTA sequence, writes result to STDOUT.

Usage:

clipFASTA -l leftclip -r rightclip fastainfile

sanitize
Deletes sequences with non-IUPAC bases or empty sequences from a FASTA file, writes
the 'surviving' sequences to a new file. If a quality file is given, a cleaned
version of that is also written. The sequences in the quality files (if given)
MUST be in the same order than in the fasta file.

Usage:

sanitizeFASTA fastainfile fastaoutfile [fastaqualin fastaqualoutfile]

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