This is the command fastatool that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fastatool - Provides a set of tools useful when working with FASTA files.
DESCRIPTION
This program is part of the MIRA assembler package. Fastatool provides a set of tools
useful when working with FASTA trace files.
Please check out the documentation below for more detailed information.
SYNOPSIS"
fastatool <toolname> <tool parameters>
OPTIONS
clip Clips bases on the left and right of a FASTA sequence, writes result to STDOUT.
Usage:
clipFASTA -l leftclip -r rightclip fastainfile
sanitize
Deletes sequences with non-IUPAC bases or empty sequences from a FASTA file, writes
the 'surviving' sequences to a new file. If a quality file is given, a cleaned
version of that is also written. The sequences in the quality files (if given)
MUST be in the same order than in the fasta file.
Usage:
sanitizeFASTA fastainfile fastaoutfile [fastaqualin fastaqualoutfile]
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