This is the command fdnaparse that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fdnapars - DNA parsimony algorithm
SYNOPSIS
fdnapars -sequence seqsetall -intreefile tree [-weights properties] [-maxtrees integer]
-thorough toggle -rearrange boolean [-transversion boolean] -njumble integer
-seed integer [-outgrno integer] [-thresh toggle] -threshold float
-outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean]
[-progress boolean] [-stepbox boolean] [-ancseq boolean] [-treeprint boolean]
-dotdiff boolean
fdnapars -help
DESCRIPTION
fdnapars is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Phylogeny:Molecular sequence" command group(s).
OPTIONS
Input section
-sequence seqsetall
File containing one or more sequence alignments
-intreefile tree
-weights properties
Additional section
-maxtrees integer
Default value: 10000
-thorough toggle
Default value: Y
-rearrange boolean
Default value: Y
-transversion boolean
Default value: N
-njumble integer
-seed integer
Default value: 1
-outgrno integer
-thresh toggle
Default value: N
-threshold float
Default value: 1.0
Output section
-outfile outfile
-trout toggle
Default value: Y
-outtreefile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
-stepbox boolean
Default value: N
-ancseq boolean
Default value: N
-treeprint boolean
Default value: Y
-dotdiff boolean
Default value: Y
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