This is the command fdnapennye that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fdnapenny - Penny algorithm for DNA
SYNOPSIS
fdnapenny -sequence seqsetall [-weights properties] [-howoften integer] [-howmany integer]
[-simple boolean] [-outgrno integer] [-thresh toggle] -threshold float
-outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean]
[-progress boolean] [-treeprint boolean] [-stepbox boolean] [-ancseq boolean]
fdnapenny -help
DESCRIPTION
fdnapenny is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Phylogeny:Molecular sequence" command group(s).
OPTIONS
Input section
-sequence seqsetall
File containing one or more sequence alignments
-weights properties
Additional section
-howoften integer
Default value: 100
-howmany integer
Default value: 1000
-simple boolean
Default value: Y
-outgrno integer
-thresh toggle
Default value: N
-threshold float
Default value: 1.0
Output section
-outfile outfile
-trout toggle
Default value: Y
-outtreefile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
-treeprint boolean
Default value: Y
-stepbox boolean
Default value: N
-ancseq boolean
Default value: N
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