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geneparse-mpi - Online in the Cloud

Run geneparse-mpi in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command geneparse-mpi that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


geneparse - sequence file loader frontend

SYNAPSE


geneparse [options...] [input] [input2 ...] #read input and write to stdout

DESCRIPTION


Reads a sequence file and writes it somewhere (by default to stdout).

A specific range within an input file can be specified by file[start,stop]. The square
brackets can be interchanged for any of {[()]}, (eg. "genome.fa[3000,4000]" or
"genome.fa{3000~4000}"). Be aware that all of those might be parsed by your shell. Also
any non-word character can be used to separate the numbers.

OPTIONS


--repeatmask|-r
use soft-repeatmasked sequences (ie: replace lowercase bases with N's).

--upper|--unmask|-U
uppercase all bases.

--length|-l
just print the length and exit

--clean|-c
don't append a new line when finished

--version|-V
prints the program version

--help|-h
prints a help message

--output|-o
send output to a file (otherwise use stdout). --output implies --clean.

--quiet|-q
silence all warnings

--verbose|-v
prints lots of extra details

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