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This is the command geneparse-mpi that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



geneparse - sequence file loader frontend


geneparse [options...] [input] [input2 ...] #read input and write to stdout


Reads a sequence file and writes it somewhere (by default to stdout).

A specific range within an input file can be specified by file[start,stop]. The square
brackets can be interchanged for any of {[()]}, (eg. "genome.fa[3000,4000]" or
"genome.fa{3000~4000}"). Be aware that all of those might be parsed by your shell. Also
any non-word character can be used to separate the numbers.


use soft-repeatmasked sequences (ie: replace lowercase bases with N's).

uppercase all bases.

just print the length and exit

don't append a new line when finished

prints the program version

prints a help message

send output to a file (otherwise use stdout). --output implies --clean.

silence all warnings

prints lots of extra details

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