This is the command gene2xml that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
gene2xml - convert NCBI Entrez Gene ASN.1 into XML
SYNOPSIS
gene2xml [-] [-b] [-c] [-i filename] [-l] [-o filename] [-p path] [-r path] [-t N] [-x]
[-y] [-z]
DESCRIPTION
gene2xml is a stand-alone program that converts Entrez Gene ASN.1 into XML. Entrez Gene
data are stored as compressed binary Entrezgene-Set ASN.1 files on the NCBI ftp site, and
have the suffix .ags.gz. These are several-fold smaller than compressed XML files,
resulting in a significant savings of disk storage and network bandwidth. Normal
processing by gene2xml produces text XML files with the same name but with .xgs as the
suffix.
OPTIONS
A summary of options is included below.
- Print usage message
-b File is Binary
-c File is Compressed
-i filename
Single Input file (standard input by default) when not using -p
-l Log processing (list files processed when using -p)
-o filename
Single Output file (standard output by default) when not using -p
-p path
Path to Files (if processing an entire directory)
-r path
Path for Results when using -p; defaults to the input directory
-t N Limit to the given Taxon ID (per http://www.ncbi.nlm.nih.gov/Taxonomy/)
-x Extract .ags to text .agc (format previously distributed)
-y Combine .agc to text .ags (for testing)
-z Combine .agc to binary .ags, then gzip
Use gene2xml online using onworks.net services
