This is the command gmt-music-plot-mutation-relationp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
gmt music plot mutation-relation - Makes plots for results from the mutation-relation tool
VERSION
This document describes gmt music plot mutation-relation version 0.04 (2016-01-01 at
23:10:19)
SYNOPSIS
gmt music plot mutation-relation --input-matrix=? --output-pdf=? [--skip-zero-mut-samples]
[--genes-to-plot=?] [--plot-genes-in-order-listed]
REQUIRED ARGUMENTS
input-matrix String
A gene/sample matrix generated by the mutation-relation tool
output-pdf String
An output pdf file to draw the plot to
OPTIONAL ARGUMENTS
skip-zero-mut-samples Boolean
Don't plot samples that have no mutations on any gene being plotted
Default value 'true' if not specified
noskip-zero-mut-samples Boolean
Make skip-zero-mut-samples 'false'
genes-to-plot String
Comma-separated list of genes to plot (example: DNMT3A,NPM1)
plot-genes-in-order-listed Boolean
Plot the genes in the order that they're listed. Default is to plot them in descending
order by number of mutations
Default value 'false' (--noplot-genes-in-order-listed) if not specified
noplot-genes-in-order-listed Boolean
Make plot-genes-in-order-listed 'false'
DESCRIPTION
Given a matrix generated using "music mutation-relation --mutation-matrix-file", this tool
will generate a plot that highlights mutual exclusivity or concurrence between the
mutation status of a predefined set of genes.
Use gmt-music-plot-mutation-relationp online using onworks.net services
