OnWorks favicon

gmt-music-plot-mutation-relationp - Online in the Cloud

Run gmt-music-plot-mutation-relationp in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command gmt-music-plot-mutation-relationp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



gmt music plot mutation-relation - Makes plots for results from the mutation-relation tool


This document describes gmt music plot mutation-relation version 0.04 (2016-01-01 at


gmt music plot mutation-relation --input-matrix=? --output-pdf=? [--skip-zero-mut-samples]
[--genes-to-plot=?] [--plot-genes-in-order-listed]


input-matrix String
A gene/sample matrix generated by the mutation-relation tool

output-pdf String
An output pdf file to draw the plot to


skip-zero-mut-samples Boolean
Don't plot samples that have no mutations on any gene being plotted

Default value 'true' if not specified

noskip-zero-mut-samples Boolean
Make skip-zero-mut-samples 'false'

genes-to-plot String
Comma-separated list of genes to plot (example: DNMT3A,NPM1)

plot-genes-in-order-listed Boolean
Plot the genes in the order that they're listed. Default is to plot them in descending
order by number of mutations

Default value 'false' (--noplot-genes-in-order-listed) if not specified

noplot-genes-in-order-listed Boolean
Make plot-genes-in-order-listed 'false'


Given a matrix generated using "music mutation-relation --mutation-matrix-file", this tool
will generate a plot that highlights mutual exclusivity or concurrence between the
mutation status of a predefined set of genes.

Use gmt-music-plot-mutation-relationp online using onworks.net services

Free Servers & Workstations

Download Windows & Linux apps

  • 1
    The strace project has been moved to
    https://strace.io. strace is a
    diagnostic, debugging and instructional
    userspace tracer for Linux. It is used
    to monitor a...
    Download strace
  • 2
    A GUI for mkvextract utility (part of
    MKVToolNix) which incorporates most (if
    not all) functionality of mkvextract and
    mkvinfo utilities. Written in C#NET 4.0,...
    Download gMKVExtractGUI
  • 3
    JasperReports Library
    JasperReports Library
    JasperReports Library is the
    world's most popular open source
    business intelligence and reporting
    engine. It is entirely written in Java
    and it is able to ...
    Download JasperReports Library
  • 4
    Frappe Books
    Frappe Books
    Frappe Books is a free and open source
    desktop book-keeping software that's
    simple and well-designed to be used by
    small businesses and freelancers. It'...
    Download Frappe Books
  • 5
    Numerical Python
    Numerical Python
    NEWS: NumPy 1.11.2 is the last release
    that will be made on sourceforge. Wheels
    for Windows, Mac, and Linux as well as
    archived source distributions can be fou...
    Download Numerical Python
  • 6
    CMU Sphinx
    CMU Sphinx
    CMUSphinx is a speaker-independent large
    vocabulary continuous speech recognizer
    released under BSD style license. It is
    also a collection of open source tools ...
    Download CMU Sphinx
  • 7
    Old Feren OS Repositories
    Old Feren OS Repositories
    This was the Official Repository for
    Feren OS. To add the latest one, run
    this command: (16.04-based) echo
    "deb ...
    Download Old Feren OS Repositories
  • More »

Linux commands