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gt-gff3validator - Online in the Cloud

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This is the command gt-gff3validator that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


gt-gff3validator - Strictly validate given GFF3 files.

SYNOPSIS


gt gff3validator [option ...] [GFF3_file ...]

DESCRIPTION


-typecheck [string]
use an ontology given in an OBO file to validate parent-child relationships. If no
argument is given, the sofa.obo file from the gtdata/obo_files directory is used. If
an argument is given, it is used as an OBO filename. In the case that such a file does
not exist .obo is added to the argument and loading the resulting filename from the
gtdata/obo_files directory is attempted. (default: undefined)

-xrfcheck [string]
check Dbxref and Ontology_term attributes for correct syntax according to a
abbreviation definition file. If no argument is given, the GO.xrf_abbs file from the
gtdata/xrf_abbr directory is used. If an argument is given, it is used as an specific
filename for an abbreviation file. In the case that such a file does not exist,
.xrf_abbr is added to the argument and loading the resulting filename from the
gtdata/xrf_abbr directory is attempted. (default: undefined)

-help
display help and exit

-version
display version information and exit

REPORTING BUGS


Report bugs to <[email protected]>.

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