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gt-seqstat - Online in the Cloud

Run gt-seqstat in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command gt-seqstat that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


gt-seqstat - Calculate statistics for fasta file(s).

SYNOPSIS


gt seqstat [options] file [...]

DESCRIPTION


-v [yes|no]
be verbose (default: no)

-distlen [yes|no]
show distribution of sequence length (default: no)

-b [value]
bucket size for distlen option (default: 100)

-binary [yes|no]
use a binary format for distlen output output filename: <first_input_filename>.distlen
bucketsize: 1 (default: no)

-contigs [yes|no]
summary of contigs set statistics (default: yes)

-astretch [yes|no]
show distribution of A-substrings (default: no)

-genome [value]
set genome length for NG50/NG80 calculation (default: 0)

-help
display help for basic options and exit

-help+
display help for all options and exit

-version
display version information and exit

REPORTING BUGS


Report bugs to <gt-users@genometools.org>.

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