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gt-simreads - Online in the Cloud

Run gt-simreads in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command gt-simreads that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


gt-simreads - Simulate sequencing reads from random positions in the input sequence(s).

SYNOPSIS


gt simreads [option ...] <encseq>

DESCRIPTION


-num [value]
desired number of reads (default: undefined)

-coverage [value]
desired coverage of the reads (default: undefined)

-len [value]
fixed read length (default: undefined)

-minlen [value]
minimal read length (default: undefined)

-maxlen [value]
maximal read length (default: undefined)

-distlen [string]
use read length distribution file (in the output format of the seqstat tool) (default:
undefined)

-o [filename]
redirect output to specified file (default: undefined)

-gzip [yes|no]
write gzip compressed output file (default: no)

-bzip2 [yes|no]
write bzip2 compressed output file (default: no)

-force [yes|no]
force writing to output file (default: no)

-p [yes|no]
show a progress bar (default: no)

-v [yes|no]
be verbose (default: no)

-ds [string]
output distribution of starting positions to specified file (default: undefined)

-dl [string]
output distribution of read lengths to specified file (default: undefined)

-ss [yes|no]
simulate reads in forward direction only (default: no)

-help
display help for basic options and exit

-help+
display help for all options and exit

-version
display version information and exit

REPORTING BUGS


Report bugs to <[email protected]>.

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