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This is the command gt-sketch that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



gt-sketch - Create graphical representation of GFF3 annotation files.


gt sketch [option ...] image_file [GFF3_file ...]


-pipe [yes|no]
use pipe mode (i.e., show all gff3 features on stdout) (default: no)

-flattenfiles [yes|no]
do not group tracks by source file name and remove file names from track description
(default: no)

-seqid [string]
sequence region identifier default: first one in file

-start [value]
start position default: first region start

-end [value]
end position default: last region end

-width [value]
target image width (in pixel) (default: 800)

-style [string]
style file to use (default: undefined)

-format [...]
output graphics format choose from png|pdf|svg|ps (default: png)

-input [...]
input data format choose from gff|bed|gtf (default: gff)

-addintrons [yes|no]
add intron features between existing exon features (before drawing) (default: no)

-unsafe [yes|no]
enable unsafe mode for style file (default: no)

-v [yes|no]
be verbose (default: no)

-force [yes|no]
force writing to output file (default: no)

display help and exit

display version information and exit


Report bugs to <[email protected]>.

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