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gt-stat - Online in the Cloud

Run gt-stat in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command gt-stat that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


gt-stat - Show statistics about features contained in GFF3 files.

SYNOPSIS


gt stat [option ...] [GFF3_file ...]

DESCRIPTION


-genelengthdistri [yes|no]
show gene length distribution (default: no)

-genescoredistri [yes|no]
show gene score distribution (default: no)

-exonlengthdistri [yes|no]
show exon length distribution (default: no)

-exonnumberdistri [yes|no]
show exon number distribution (default: no)

-intronlengthdistri [yes|no]
show intron length distribution (default: no)

-cdslengthdistri [yes|no]
show CDS length distribution (measured in amino acids) (default: no)

-source [yes|no]
show the set of used source tags (column 2 in regular GFF3 lines) (default: no)

-addintrons [yes|no]
add intron features between existing exon features (before computing stats) (default:
no)

-v [yes|no]
be verbose (default: no)

-o [filename]
redirect output to specified file (default: undefined)

-gzip [yes|no]
write gzip compressed output file (default: no)

-bzip2 [yes|no]
write bzip2 compressed output file (default: no)

-force [yes|no]
force writing to output file (default: no)

-help
display help and exit

-version
display version information and exit

REPORTING BUGS


Report bugs to <gt-users@genometools.org>.

Use gt-stat online using onworks.net services


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