This is the command gt-tallymer-search that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
gt-tallymer-search - Search a set of k-mers in an index constructed by ``gt tallymer
mkindex''.
SYNOPSIS
gt tallymer search [options] -tyr tallymer-index -q queryfile0 [queryfile1..] [options]
DESCRIPTION
-tyr [string]
specify tallymer-index (default: undefined)
-q
specify query file names
-strand [string]
specify the strand to be searched: use f (for forward strand) or p (for reverse
complemented strand) or fp (for both); default is f (default: f)
-output
specify output flags (qseqnum, qpos, counts, sequence)
-v [yes|no]
be verbose (default: no)
-help
display help and exit
-version
display version information and exit
REPORTING BUGS
Report bugs to <[email protected]>.
Use gt-tallymer-search online using onworks.net services
