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gt-tallymer-search - Online in the Cloud

Run gt-tallymer-search in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command gt-tallymer-search that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


gt-tallymer-search - Search a set of k-mers in an index constructed by ``gt tallymer
mkindex''.

SYNOPSIS


gt tallymer search [options] -tyr tallymer-index -q queryfile0 [queryfile1..] [options]

DESCRIPTION


-tyr [string]
specify tallymer-index (default: undefined)

-q
specify query file names

-strand [string]
specify the strand to be searched: use f (for forward strand) or p (for reverse
complemented strand) or fp (for both); default is f (default: f)

-output
specify output flags (qseqnum, qpos, counts, sequence)

-v [yes|no]
be verbose (default: no)

-help
display help and exit

-version
display version information and exit

REPORTING BUGS


Report bugs to <[email protected]>.

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